MRIQC: individual T1w report

Summary

Subject ID: 024_ExercisePre.
Date and time: 2018-05-07, 01:31.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2816419767051824
cnr			4.448933950205649
efc			0.59086680918525
fber			78.64485931396484
fwhm	avg		4.072126666666667
fwhm	x		3.90792
fwhm	y		4.27415
fwhm	z		4.03431
icvs	csf		0.2048932309782737
icvs	gm		0.460229021270303
icvs	wm		0.3348777477514233
inu	med		1.0159199237823486
inu	range		0.3350638747215269
qi	1		0.0
qi	2		0.0009713881177390929
rpve	csf		24.798263252562275
rpve	gm		12.321489637429433
rpve	wm		19.49358157243987
size	x		180
size	y		256
size	z		256
snr	csf		2.32291888699429
snr	gm		10.421792612241985
snr	total		9.620006143219756
snr	wm		16.115306930422996
snrd	csf		11.175996907052227
snrd	gm		25.220499628180363
snrd	total		25.879557297432168
snrd	wm		41.24217535706391
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.765028719604315
summary	bg	mad	15.885387420654297
summary	bg	mean	55.37176513671875
summary	bg	median	52.65940475463867
summary	bg	n	3254537.0
summary	bg	p05	31.794748687744143
summary	bg	p95	88.44052124023435
summary	bg	stdv	18.200092315673828
summary	csf	k	0.12317380527684652
summary	csf	mad	126.20929718017578
summary	csf	mean	281.54345703125
summary	csf	median	270.98944091796875
summary	csf	n	11725.0
summary	csf	p05	113.4708938598633
summary	csf	p95	481.04580078125
summary	csf	stdv	116.65404510498047
summary	gm	k	0.12773017831082534
summary	gm	mad	57.38613510131836
summary	gm	mean	610.9724731445312
summary	gm	median	611.5328369140625
summary	gm	n	30481.0
summary	gm	p05	511.7138671875
summary	gm	p95	704.7233276367188
summary	gm	stdv	58.67731475830078
summary	wm	k	0.7675058146787865
summary	wm	mad	52.02749252319336
summary	wm	mean	994.4925537109375
summary	wm	median	1000.0176391601562
summary	wm	n	175024.0
summary	wm	p05	875.6023651123047
summary	wm	p95	1086.3260131835937
summary	wm	stdv	62.0537223815918
tpm	overlap	csf	0.20919805765151978
tpm	overlap	gm	0.5318276882171631
tpm	overlap	wm	0.546286404132843
wm2max			0.6341142769109861

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	938f98ed667d194eabefde5f602c1253
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.