MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2816419767051824
cnr4.448933950205649
efc0.59086680918525
fber78.64485931396484
fwhmavg4.072126666666667
fwhmx3.90792
fwhmy4.27415
fwhmz4.03431
icvscsf0.2048932309782737
icvsgm0.460229021270303
icvswm0.3348777477514233
inumed1.0159199237823486
inurange0.3350638747215269
qi10.0
qi20.0009713881177390929
rpvecsf24.798263252562275
rpvegm12.321489637429433
rpvewm19.49358157243987
sizex180
sizey256
sizez256
snrcsf2.32291888699429
snrgm10.421792612241985
snrtotal9.620006143219756
snrwm16.115306930422996
snrdcsf11.175996907052227
snrdgm25.220499628180363
snrdtotal25.879557297432168
snrdwm41.24217535706391
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.765028719604315
summarybgmad15.885387420654297
summarybgmean55.37176513671875
summarybgmedian52.65940475463867
summarybgn3254537.0
summarybgp0531.794748687744143
summarybgp9588.44052124023435
summarybgstdv18.200092315673828
summarycsfk0.12317380527684652
summarycsfmad126.20929718017578
summarycsfmean281.54345703125
summarycsfmedian270.98944091796875
summarycsfn11725.0
summarycsfp05113.4708938598633
summarycsfp95481.04580078125
summarycsfstdv116.65404510498047
summarygmk0.12773017831082534
summarygmmad57.38613510131836
summarygmmean610.9724731445312
summarygmmedian611.5328369140625
summarygmn30481.0
summarygmp05511.7138671875
summarygmp95704.7233276367188
summarygmstdv58.67731475830078
summarywmk0.7675058146787865
summarywmmad52.02749252319336
summarywmmean994.4925537109375
summarywmmedian1000.0176391601562
summarywmn175024.0
summarywmp05875.6023651123047
summarywmp951086.3260131835937
summarywmstdv62.0537223815918
tpmoverlapcsf0.20919805765151978
tpmoverlapgm0.5318276882171631
tpmoverlapwm0.546286404132843
wm2max0.6341142769109861

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum938f98ed667d194eabefde5f602c1253
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.